PeptideDB

STAMBP-IN-1 896683-78-6

STAMBP-IN-1 896683-78-6

CAS No.: 896683-78-6

STAMBP-IN-1 is a small molecule inhibitor of STAMBP deubiquitinase that can interrupt the STAMBP-Ub-NALP7 interaction. A
Data collection:peptidedb@qq.com

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STAMBP-IN-1 is a small molecule inhibitor of STAMBP deubiquitinase that can interrupt the STAMBP-Ub-NALP7 interaction. After Toll-like receptor (TLR) stimulation, STAMBP-IN-1 can reduce the protein level of inflammasome substrate NALP7 and inhibit IL-1b release. STAMBP-in-1 inhibits the activity of STAMBP in cleaving recombinant protein di-Ub with IC50 of 0.33 mM.

Physicochemical Properties


Molecular Formula C27H32N4O4S
Molecular Weight 508.6324
Exact Mass 504.183
CAS # 896683-78-6
PubChem CID 3293286
Appearance White to light yellow solid powder
LogP 3.5
Hydrogen Bond Donor Count 1
Hydrogen Bond Acceptor Count 7
Rotatable Bond Count 9
Heavy Atom Count 36
Complexity 784
Defined Atom Stereocenter Count 0
SMILES

S(C([H])([H])C(N([H])C([H])([H])[C@@]1([H])C([H])([H])C([H])([H])C([H])([H])O1)=O)C1=NC2C([H])=C([H])C(=C([H])C=2C(N1C([H])([H])C([H])([H])C1C([H])=C([H])C([H])=C([H])C=1[H])=O)N1C([H])([H])C([H])([H])OC([H])([H])C1([H])[H]

InChi Key HBAWGWWMULJGHR-UHFFFAOYSA-N
InChi Code

InChI=1S/C27H28N4O4S/c32-25(28-18-22-7-4-14-35-22)19-36-27-29-24-9-8-21(30-12-15-34-16-13-30)17-23(24)26(33)31(27)11-10-20-5-2-1-3-6-20/h1-9,14,17H,10-13,15-16,18-19H2,(H,28,32)
Chemical Name

N-(furan-2-ylmethyl)-2-[6-morpholin-4-yl-4-oxo-3-(2-phenylethyl)quinazolin-2-yl]sulfanylacetamide
HS Tariff Code 2934.99.9001
Storage

Powder-20°C 3 years

4°C 2 years

In solvent -80°C 6 months

-20°C 1 month

Note: Please store this product in a sealed and protected environment (e.g. under nitrogen), avoid exposure to moisture and light.
Shipping Condition Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)

Biological Activity


ln Vitro STAMBP-IN-1 (0.1-10 μM; 6 h) shows the most capacity to reduce endogenous NALP7 abundance in THP-1 cells and to specifically reduce NALP7 abundance, but not NALP6[1]. The cleavage of K63-linked di-Ub (200 nM) to mono-Ub by pure recombinant STAMBP (25 nM) is inhibited by STAMBP-IN-1 (0.01 -100 μM; 37 °C; 2 h) in a concentration-dependent manner[1]. In vitro, STAMBP-IN-1 (0.01-0.10 μM; 37 ℃; 60 min) inhibits the concentration-dependent deubiquitination of Ub-NALP7 mediated by STAMBP[1]. STAMBP-IN-1 has an IC50 of 106 μg/mL and is toxic to THP-1 cells[1].
Cell Assay Western Blot Analysis[1]
Cell Types: THP-1 cells
Tested Concentrations: 0.01, 0.1, 1, 10, and 100 μM
Incubation Duration: 6 hrs (hours)
Experimental Results: Inhibited the activity of STAMBP to cleave recombinant di-Ub in a concentrationdependent manner with an IC50 of 0.33 mM (0.09-1.21 mM).
References

[1]. Targeting the deubiquitinase STAMBP inhibits NALP7 inflammasome activity. Nat Commun. 2017 May 11;8:15203.


Solubility Data


Solubility (In Vitro) DMSO : 3.29 mg/mL (6.52 mM)
Solubility (In Vivo) Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300 :Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300:Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)

Oral Formulations Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders

Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.9661 mL 9.8303 mL 19.6607 mL
5 mM 0.3932 mL 1.9661 mL 3.9321 mL
10 mM 0.1966 mL 0.9830 mL 1.9661 mL
*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.