PROTAC SGK3 degrader-1 (SGK3-PROTAC1) is a PROTAC-based degrader of SKG3 (Serum/Glucocorticoid Regulated Kinase Family Member 3), inducing 50% degradation of endogenous SGK3 in 2 hours, with maximal 80% degradation occurred within 8 hours, accompanied by a loss of phosphorylation of NDRG1 (an SGK3 substrate).
Physicochemical Properties
| Molecular Formula | C57H73FN10O11S2 |
| Molecular Weight | 1157.37833476067 |
| Exact Mass | 1156.488 |
| CAS # | 2381320-35-8 |
| PubChem CID | 139035049 |
| Appearance | White to off-white solid powder |
| LogP | 6 |
| Hydrogen Bond Donor Count | 5 |
| Hydrogen Bond Acceptor Count | 19 |
| Rotatable Bond Count | 29 |
| Heavy Atom Count | 81 |
| Complexity | 2050 |
| Defined Atom Stereocenter Count | 4 |
| SMILES | S1C=NC(C)=C1C1C=CC(=CC=1)CNC([C@@H]1C[C@H](CN1C([C@H](C(C)(C)C)NC(COCCOCCOCCCCCCN1CCO[C@@H](COC2C3C=NNC=3N=C(C3C=CC(=CC=3)NS(C3C(=CC=C(C)C=3)F)(=O)=O)N=2)C1)=O)=O)O)=O |
| InChi Key | RTFQFPZKDYMMMJ-RIAKQDHQSA-N |
| InChi Code | InChI=1S/C57H73FN10O11S2/c1-37-10-19-46(58)48(28-37)81(73,74)66-42-17-15-41(16-18-42)52-63-53-45(31-61-65-53)55(64-52)79-34-44-33-67(21-23-78-44)20-8-6-7-9-22-75-24-25-76-26-27-77-35-49(70)62-51(57(3,4)5)56(72)68-32-43(69)29-47(68)54(71)59-30-39-11-13-40(14-12-39)50-38(2)60-36-80-50/h10-19,28,31,36,43-44,47,51,66,69H,6-9,20-27,29-30,32-35H2,1-5H3,(H,59,71)(H,62,70)(H,61,63,64,65)/t43-,44-,47+,51-/m1/s1 |
| Chemical Name | (2S,4R)-1-[(2S)-2-[[2-[2-[2-[6-[(2R)-2-[[6-[4-[(2-fluoro-5-methylphenyl)sulfonylamino]phenyl]-1H-pyrazolo[3,4-d]pyrimidin-4-yl]oxymethyl]morpholin-4-yl]hexoxy]ethoxy]ethoxy]acetyl]amino]-3,3-dimethylbutanoyl]-4-hydroxy-N-[[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl]pyrrolidine-2-carboxamide |
| HS Tariff Code | 2934.99.9001 |
| Storage |
Powder-20°C 3 years 4°C 2 years In solvent -80°C 6 months -20°C 1 month Note: Please store this product in a sealed and protected environment (e.g. under nitrogen), avoid exposure to moisture. |
| Shipping Condition | Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs) |
Biological Activity
| ln Vitro | When coupled with GDC0941, PROTAC SGK3 degrader-1 (SGK3-PROTAC1) (0.3 μM, 4 weeks) suppresses the development of CAMA-1 or ZR-75-1 cells [1]. Within HEK293 cells, PROTAC SGK3 degrader-1 (0.1 μM, 48 h) 2 decreases SGK3 levels by 65% while leaving SGK1, SGK2, and S6K1 expression levels unchanged [1]. In HEK293 cells, PROTAC SGK3 degrader-1 (1–10 μM, 48 h) regulates the decrease in S6K1 levels [1]. SGK3 degrader-1 (>0.1 μM, 8 h) can promote SGK3 phosphorylation in CAMA-1 and ZR-75-1 cells and diminish NDRG1 phosphorylation in HEK293 cells, but not SGK1 or S6K phosphorylation [1]. |
| Cell Assay |
Cell viability assay [1] Cell Types: CAMA-1 or ZR-75-1 Cell Tested Concentrations: 0.3 μM Incubation Duration: 4 weeks Experimental Results: Cell growth can be inhibited when used in combination with GDC0941. Western Blot Analysis[1] Cell Types: HEK293 Cell Tested Concentrations: 0.1 μM Incubation Duration: 48 hrs (hours) Experimental Results: 65% reduction in SGK3 levels without affecting SGK1, SGK2 or S6K1. |
| References |
[1]. Design and Characterization of SGK3-PROTAC1, an Isoform Specific SGK3 Kinase PROTAC Degrader. ACS Chem Biol. 2019 Sep 20;14(9):2024-2034. |
Solubility Data
| Solubility (In Vitro) | DMSO : ≥ 100 mg/mL (~86.40 mM) |
| Solubility (In Vivo) |
Solubility in Formulation 1: ≥ 2.5 mg/mL (2.16 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution. For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL. Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution. Solubility in Formulation 2: ≥ 2.5 mg/mL (2.16 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution. For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.  (Please use freshly prepared in vivo formulations for optimal results.) |
| Preparing Stock Solutions | 1 mg | 5 mg | 10 mg | |
| 1 mM | 0.8640 mL | 4.3201 mL | 8.6402 mL | |
| 5 mM | 0.1728 mL | 0.8640 mL | 1.7280 mL | |
| 10 mM | 0.0864 mL | 0.4320 mL | 0.8640 mL |