PeptideDB

PROTAC RIPK degrader-6 2089205-64-9

PROTAC RIPK degrader-6 2089205-64-9

CAS No.: 2089205-64-9

PROTAC RIPK degrader-6 (example 1) is an effective RIP Kinase degrader of the PROTAC class based on Cereblon ligand.
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PROTAC RIPK degrader-6 (example 1) is an effective RIP Kinase degrader of the PROTAC class based on Cereblon ligand.

Physicochemical Properties


Molecular Formula C43H48N6O11S2
Molecular Weight 889.0048
Exact Mass 888.282
CAS # 2089205-64-9
PubChem CID 126696039
Appearance Light yellow to yellow solid powder
LogP 3
Hydrogen Bond Donor Count 3
Hydrogen Bond Acceptor Count 15
Rotatable Bond Count 21
Heavy Atom Count 62
Complexity 1650
Defined Atom Stereocenter Count 0
SMILES

S(C1=C([H])C2=C(C([H])=C([H])N=C2C([H])=C1OC([H])([H])C([H])([H])OC([H])([H])C([H])([H])OC([H])([H])C([H])([H])OC([H])([H])C([H])([H])OC([H])([H])C(N([H])C1=C([H])C([H])=C([H])C2C(N(C([H])([H])C=21)C1([H])C(N([H])C(C([H])([H])C1([H])[H])=O)=O)=O)=O)N([H])C1C([H])=C([H])C2=C(C=1[H])N=C([H])S2)(C(C([H])([H])[H])(C([H])([H])[H])C([H])([H])[H])(=O)=O

InChi Key BRZGXSNAXRPPFI-UHFFFAOYSA-N
InChi Code

InChI=1S/C43H48N6O11S2/c1-43(2,3)62(54,55)38-22-29-32(46-27-7-9-37-34(21-27)45-26-61-37)11-12-44-33(29)23-36(38)60-20-19-58-16-15-56-13-14-57-17-18-59-25-40(51)47-31-6-4-5-28-30(31)24-49(42(28)53)35-8-10-39(50)48-41(35)52/h4-7,9,11-12,21-23,26,35H,8,10,13-20,24-25H2,1-3H3,(H,44,46)(H,47,51)(H,48,50,52)
Chemical Name

2-[2-[2-[2-[2-[4-(1,3-benzothiazol-5-ylamino)-6-tert-butylsulfonylquinolin-7-yl]oxyethoxy]ethoxy]ethoxy]ethoxy]-N-[2-(2,6-dioxopiperidin-3-yl)-1-oxo-3H-isoindol-4-yl]acetamide
HS Tariff Code 2934.99.9001
Storage

Powder-20°C 3 years

4°C 2 years

In solvent -80°C 6 months

-20°C 1 month

Shipping Condition Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)

Biological Activity


Targets Cereblon
ln Vitro Proteins and other peptides that bind to the brain on the one end and the target protein (RIP2 kinase) on the other can be targeted and degraded using PROTACs. These substances form a ternary complex with E3 ligases that proximately binds the target protein, causing polyubiquitination and subsequent degradation [1].
References

[1]. Compounds for the modulation of rip2 kinase activity. WO2017046036A1.


Solubility Data


Solubility (In Vitro) DMSO : 100 mg/mL (112.49 mM)
Solubility (In Vivo) Solubility in Formulation 1: ≥ 7.5 mg/mL (8.44 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 75.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 7.5 mg/mL (8.44 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 75.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.1249 mL 5.6243 mL 11.2486 mL
5 mM 0.2250 mL 1.1249 mL 2.2497 mL
10 mM 0.1125 mL 0.5624 mL 1.1249 mL
*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.