PeptideDB

ERK5-IN-4 1888305-17-6

ERK5-IN-4 1888305-17-6

CAS No.: 1888305-17-6

ERK5-IN-4 (compound 34b) is a selective inhibitor of extracellular signal-related kinase 5 (ERK5). The ERK5-IN-4 inhibit
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ERK5-IN-4 (compound 34b) is a selective inhibitor of extracellular signal-related kinase 5 (ERK5). The ERK5-IN-4 inhibitor inhibits the kinase activity of ERK5 full-length kinase and truncated ERK5 (ERK5ΔTAD) in HEK293 cells with IC50s of 77 nM and 300 nM, respectively.

Physicochemical Properties


Molecular Formula C16H11CL2FN4O2
Molecular Weight 381.188544511795
Exact Mass 380.024
CAS # 1888305-17-6
PubChem CID 118959090
Appearance Typically exists as solid at room temperature
LogP 2.9
Hydrogen Bond Donor Count 2
Hydrogen Bond Acceptor Count 4
Rotatable Bond Count 4
Heavy Atom Count 25
Complexity 526
Defined Atom Stereocenter Count 0
InChi Key LIEUQFMVFKJKHX-UHFFFAOYSA-N
InChi Code

InChI=1S/C16H11Cl2FN4O2/c1-23-7-9(6-21-23)22-16(25)12-4-8(5-20-12)15(24)13-10(17)2-3-11(18)14(13)19/h2-7,20H,1H3,(H,22,25)
Chemical Name

4-(3,6-dichloro-2-fluorobenzoyl)-N-(1-methylpyrazol-4-yl)-1H-pyrrole-2-carboxamide
HS Tariff Code 2934.99.9001
Storage

Powder-20°C 3 years

4°C 2 years

In solvent -80°C 6 months

-20°C 1 month

Shipping Condition Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)

Biological Activity


ln Vitro ERK5-IN-4 (compound 34b) is selective for MAP3K, p38 (IC50>30 μM), and BRD4 (IC50>20 μM), in contrast to several other reported ERK5 inhibitors [1]. ERK5-IN-4 (0-100 μM; 72 h) suppresses HEK293 cells' ERK5 kinase activity, and (0-1 μM; 72 h) causes ERK5 transcriptional activity to be paradoxically activated, producing the C-terminal transcriptional activation domain (TAD), which separates from the nuclear localization sequence (NLS) and results in ERK5 nuclear translocation [1]. After 72 hours of incubation, ERK5-IN-4 suppresses cancer cells with GI50s of 19.6 μM (HEK293), 22.3 μM (A498), 25 μM (SJSA-1), and 26.6 μM (MDA-MB-231). [1]. For ABL1 that is not phosphorylated, AURKA, CSF1R, and DCAMKL1, the kinome selectivity Kd of ERK5-IN-4 is 1.2 μM, 0.29 μM, 0.046 μM, 0.061 μM, 0.18 μM, 0.38 μM, 1.3 μM, 0.42 μM, 0.22 μM, 2.8 μM (DCLK1), ERK5 (MAPK7), FGFR1, JAK3 (JH1 domain catalytic), KIT, LRRK2, MEK5 (MAP2K5).
ln Vivo ERK5-IN-4 (compound 34b) (oral; 10 mg/kg) shows limited clearance in mice, with an oral bioavailability of 42% [1].
Cell Assay Western Blot Analysis[1]
Cell Types: HeLa cells
Tested Concentrations: 0.01, 0.03, 0.1, 0.3, 1, 3 μM
Incubation Duration: 1 hour
Experimental Results: Upper phosphorylated ERK5 band produced upon EGF stimulation and inhibition.
Animal Protocol Animal/Disease Models: pharmacokinetic/PK/PK Parameters of ERK5-IN-4[1]
Doses:
Route of Administration:
Experimental Results: Route Dose (mg/kg) Cl (mL/min/kg) Vd (L/kg) t1/2 ( min) BA (%) intravenously (iv) (iv)(iv) or orally10 14 0.6 80 42
References

[1]. Parallel Optimization of Potency and Pharmacokinetics Leading to the Discovery of a Pyrrole Carboxamide ERK5 Kinase Domain Inhibitor. J Med Chem. 2022 May 12. 65(9):6513-6540.


Solubility Data


Solubility (In Vitro) May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo) Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300 :Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300:Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)

Oral Formulations Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders

Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.6234 mL 13.1168 mL 26.2336 mL
5 mM 0.5247 mL 2.6234 mL 5.2467 mL
10 mM 0.2623 mL 1.3117 mL 2.6234 mL
*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.